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Bioinformatics Tools and Database on JPR SI (2016 Update)
Admin 
16-11-11 14:33
Hit : 994
2016

gFinder
http://gfinder.proteomix.org/
Kim JW et al. (2016) gFinder: A Web-Based Bioinformatics Tool for the Analysis of N-Glycopeptides. J Proteome Res., 15, 4116-4125.

iGPA
Park GW et. al. (2016) Integrated GlycoProteome Analyzer (I-GPA) for Automated Identification and Quantitation of Site-Specific N-Glycosylation. Sci Rep., 17 6:21175.


2015

GenomewidePDB
http://genomewidepdb.proteomix.org/
Jeong, S. K. et al. (2015) GenomewidePDB 2.0: A Newly Upgraded Versatile Proteogenomic Database for the Chromosome-Centric Human Proteome Project. J. Proteome Res., 14, 3710-3719. 

PPLine
https://sourceforge.net/projects/ppline/
Krasnov, G. S. et al. (2015)
PPLine: An Automated Pipeline for SNP, SAP, and Splice Variant Detection in the Context of Proteogenomics.
J. Proteome Res., 14, 3729-3737.

dasHPPboard
http://sphppdashboard.cnb.csic.es/
Tabas-Madrid, D. et al. (2015) Proteogenomics Dashboard for the Human Proteome Project. J. Proteome Res., 14, 3738-3749