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Bioinformatics Tools and Database on JPR SI (2016 Update)

Admin

16-11-11 14:33

2016

gFinder

http://gfinder.proteomix.org/

Kim JW et al. (2016) gFinder: A Web-Based Bioinformatics Tool for the Analysis of N-Glycopeptides. J Proteome Res., 15, 4116-4125.

iGPA

Park GW et. al. (2016) Integrated GlycoProteome Analyzer (I-GPA) for Automated Identification and Quantitation of Site-Specific N-Glycosylation. Sci Rep., 17 6:21175.

2015

GenomewidePDB

http://genomewidepdb.proteomix.org/

Jeong, S. K. et al. (2015) GenomewidePDB 2.0: A Newly Upgraded Versatile Proteogenomic Database for the Chromosome-Centric Human Proteome Project. J. Proteome Res., 14, 3710-3719.

PPLine

https://sourceforge.net/projects/ppline/

Krasnov, G. S. et al. (2015)

PPLine: An Automated Pipeline for SNP, SAP, and Splice Variant Detection in the Context of Proteogenomics.

J. Proteome Res., 14, 3729-3737.

dasHPPboard

http://sphppdashboard.cnb.csic.es/

Tabas-Madrid, D. et al. (2015) Proteogenomics Dashboard for the Human Proteome Project. J. Proteome Res., 14, 3738-3749