5th C-HPP Consortium Workshop - The Chromosome-Centric Human Proteome Project
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13-09-16 15:37
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5th C-HPP Consortium Workshop The Chromosome-Centric Human Proteome Project (April 8, 2012 version, subjected to change without notice)
- Date: Saturday, May 5, 2012, 10:00-17:00
- Venue: China National Convention Center, Beijing, China
- Organized by Young-Ki Paik, Bill Hancock and György Marko-Varga
- Hosted by Fuchu He, Beijing Proteome Research Center, Beijing, China
- Theme:”Setting out the standard guidelines and the milestones for the C-HPP”
- Goals: Completion of the organization and working formats for the C-HPP
AGENDA
10:00-10:05 |
Greetings from the Local Host: Fuchu He, BPRC, China |
10:05-10:20 |
Strategic Directions for the C-HPP as Part of the Overall Human Proteome Project (HPP) Gil Omenn, Chair of HPP Consortium Univ. of Michigan, Ann Arbor, USA
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10:20-10:30 |
Update on the progress of the C-HPP Consortium Young-Ki Paik, Chair of C-HPP Consortium |
10:30-11:00 |
Genetic variants from next generation, whole genome DNA sequencing datasets: A 1000 Genomes Perspective Charles Lee, Harvard Medical School, Co-Chair of 1000 Genome Project |
11:00-12:30 |
Key issues on the execution of the C-HPP guidelines (e.g., Bioinformatics) Co-Chaired by William S. Hancock, Gil Omenn and Pierre Legrain
- Completion of the Structure (Committees, WG etc)
- Data Management (to address the questions how the data generated in the specific chromosome projects will be transferred to the three pillar databases, what quality criteria should be applied etc.)-see also JPR guideline paper re data management
- General Experimental Procedures
- Resources: Abs and Reagents (Eduardo Nice and more)
- Bioinformatics and Web Portal (Seul-Ki Jeong, Robert J. A. Goode,, more)
- Coordination with B/D-HPP, HPP Resource Pillars, and Other HUPO initiatives (HAI, PSI etc)
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12:30-14:00 |
Luncheon Symposium |
12:50-14:30 |
Progress report on each chromosome team
Part I: Chair, György Marko-Varga Co-Chair of C-HPP Consortium
Chr 1 (China) |
CAPE (Chromosome-Assembled Proteome Encyclopedia) and its highlight with chromosomes 1 and 8 Fuchu He, BPRC, Beijing, China |
Chr 2 (Switzerland) |
Pierre-Alain Binz, SIB, Geneva, Switzerland |
Chr 3 (Japan) |
Chromome 3 and The Disease-Related Proteins Discovered Using Laser-Microdissected (LMD) Lung-Carcinoma FFPE tissues Toshihide Nishimura/Hiromasa Tojo/Kazuyuki Nakamura Tokyo Medical Univ., Tokyo, Japan |
Chr 7 (ANZ) |
Down Under Chromosome 7 by Mark Baker, Macquarie University, AUSTRALIA and Bill Jordan, Victoria University of Wellington New Zealand | Part II: Chair, Pierre Legrain, Ecole Polytechnique, France
Chr 11 (Korea) |
Human Proteome Project for Chromosome 11 in Human Brain Tissue Jong Shin Yoo, KBSI, Daejon, Korea |
Chr 12 (Thailand) |
Introduction of Chromosome 12 Initiative Visith Thongboonkerd Bangkok, Mahidol University, Bankok, Thailand |
Chr 13 (Korea) |
Progress on Chr 13 HPP Young-Ki Paik, YPRC, Seoul, Korea |
Chr 16 (Spain) |
Spanish HPP Consortium: Current Developments on the Characterization of the Proteins Encoded by the Chromosome 16 Juan Pablo Albar, Madrid, Spain |
Chr 17 (USA) |
Bill Hancock, Northeastern Univ., Boston, USA | Part III: Chair, Fuchu He, BPRC, Beijing, China
Chr-18 (Russia) |
Proteome of 18th chromosome in plasma, liver and HepG2 cells investigated by SRM/MRMs Alexander Archakov, RAMS, Moscow, Russia |
Chr-19 (Sweden) |
Progress Report from Chromosome 19 György Marko-Varga, Lund Univ., Lund, Sweden |
Chr-X (Japan) |
Japan chromosome X Project (JCXP) Consortium: To Do and Done Tadashi Yamamoto, Niigata Univ., Niigata, Japan |
Chr-Y (Iran) |
Human Y Chromosome Proteome Project: a Genomics and Proteomics Perspective Ghasem Hosseini Salekdeh, Royan Inst., Tehran, Iran | (Only three teams of Chr 6, 14, 21 will be missing from this workshop) |
14:30-14:50 |
Coffee Break |
14:50-15:30 |
Funding issues: by György Marko-Varga and Pierre Legrain Grant Situation (any granting agency for C-HPP). |
15:30-16:40 |
Progress Reports and Publications: by Bill Hancock and Young-Ki Paik
- Progress Report Forms (standard form) (To be distributed later)
- Special Issue Publication: Jan 2013 Issue of JPR:
- General guidelines for manuscript preparation and submission
- Deadline of Submission: Sept 30, 2012
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16:40-17:00 |
Upcoming Boston Congress and Strategy for Session Organization G. Omenn, Y.K. Paik and W.H. Hancock | Inquiry: For Logistics and Travel Arrangement, Contact: Dr. Ping Xu, xupingghy@gmail.com For Programs and Presentations, Contact: Prof. Young-Ki Paik, paikyk@gmail.com
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